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… processes, making it difficult to propose projects that truly integrated the capabilities of more than one …

… of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, … phylogenomics) and machine learning to find novel functions that may impact microbiome structure and biogeochemical …

… They’re a great way to see how climate change affects freshwater ecosystems, and how those ecosystems work. …

… approaches.  Our group also seeks out new approaches that utilize microfluidics/microdroplet technology in order … Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical standards to accurately … microorganisms and start making quantitative measurements that answer questions such as, “who is eating what?” and …

… forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the … which microbes in the soil persist after a wildfire — and why they thrive — gives forest managers more avenues to … builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful snapshot of what soils …

… a tiny, single-celled alga – Chlamydomonas reinhardtii – that’s managed to have a big impact. UC Berkeley plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other …

… access to all the data in Phytozome v12, and that most bookmarked v12 links (e.g., to gene reports and … Questions about the transition from Phytozome v12 to v13. Why is it necessary to retire Phytozome v12? The codebase … preset for the gene in question, so you can download sequences, annotations, and gene structures. These genomes’ …

… The soybean is a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into soybean’s …

… Nikos Kyrpides  and Simon Roux — features 600 genome sequences for Actinobacteria.  Woyke  was also one of three authors on a recent study that made the cover of  Nature Reviews Microbiology ,  summarizing insights from three decades of work on giant viruses — providing a perspective on giant virus diversity, …