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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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The Busy World of Deep Sea Eruptions
The ocean depths are vast and dark. But there are hotspots on the ocean floor — underwater volcanoes and hydrothermal vents — …
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JGI@25: Strengthening Soybean
… impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program. … first legume species with a published complete draft genome sequence. At the time, the vital global source of both … of seed oils as biofuel. After analyzing the original sequence, Gary Stacey of the University of Missouri said he …
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Accelerating Metagenomics Discoveries with Deep Learning
… of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural similarities in proteins that low sequence identity may belie. The technology he’s using is … Deep learning algorithms can vectorize faces… … so, why not proteins?         … The U.S. Department of Energy …
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Micro-Scale Applications Group
… access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated … now uses laser microdissection to selectively isolate and sequence microbial aggregates after first imaging with …
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Effects of Polar Light Cycle on Microbial Food Web
… in other Antarctic lakes and the nearby Southern Ocean shift from phototrophs to archaea when sunlight … world. The Impact From the polar regions to the deep ocean, cold environments occupy more space on Earth than any … Hills in East Antarctica, was separated from the Southern Ocean roughly 5-7,000 years ago and has been well-studied by …
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Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228PT)
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Dealing with Drought: Uncovering Sorghum’s Secrets
Department of Agriculture P­­lant Gene Expression Center, Pacific Northwest National Laboratory, and the U.S. … conventional food crops. For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be … diseases are well known to be partially due to the DNA sequence that makes up an individual’s genome. The genes of …
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JGIota: The Algae Nicknamed ‘Chlamy’
UC Berkeley plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other …
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Understanding Wildfire Recovery, Starting in Soil
… which microbes in the soil persist after a wildfire — and why they thrive — gives forest managers more avenues to … builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful snapshot of what soils … JGI are DOE Office of Science User Facilities located at Pacific Northwest National Laboratory and Lawrence Berkeley …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team … and others that preferred the hollows. Those genome sequences showed not only that the sex of a sphagnum plant …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… their flagella and other traits when migrating back to the ocean. The Science Scientists have discovered flagella in an … were part of an ancient lineage of bacteria to migrate from oceans and colonize land. Terrestrial  Chloroflexota have … most marine  Chloroflexota lost when they returned to an ocean home. A deeper understanding of how these bacteria …
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