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… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural … Deep learning algorithms can vectorize faces… … so, why not proteins?         …

… Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new approaches that utilize microfluidics/microdroplet technology in order to enhance the … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) …

… hydroxyapatite, a high-value biomaterial with a wide range of industrial applications. The team was led by researchers at two U.S. Department of Energy national user facilities – the DOE Joint Genome … in the development and biotechnology applications of various biomaterials. These efforts align with BER …

… with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single … comes from finally having an answer to the question, “Why bother keeping this?” For Stuart McDaniel’s lab at the … Cross-Disciplinary Training Grant, Sigma-Xi Grant-In-Aid of Research, and Society for the Study of Evolution Rosemary …

… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 … Jill Banfield approached Doudna with repeated genetic sequences (already known as CRISPR) that came up in her … and his group study one specific alga,  Emiliania huxleyi  (sequenced by the JGI), and the virus that infects it,  …

… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over … about 200,000 fungal species have been named. Among those sequenced, roughly half of all genes have completely unknown … for prediction of fungal lifestyles based on genome sequences.” The Fungal Knowledge Gap The fungal kingdom …

… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version … Questions about the transition from Phytozome v12 to v13. Why is it necessary to retire Phytozome v12? The codebase … preset for the gene in question, so you can download sequences, annotations, and gene structures. These genomes’ …

… on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … metagenomes can I submit?  How deeply are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), …

… A nuanced understanding of peat moss drives insight into carbon storage   The … Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team … and others that preferred the hollows. Those genome sequences showed not only that the sex of a sphagnum plant …

… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … genomic biodiversity. Using publicly available genome sequence data generated over the past three decades, their … group. “Turns out that despite all the genomes we've sequenced, we've only scratched the surface.” The study, …