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Accelerating Metagenomics Discoveries with Deep Learning
On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared their … of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural … Deep learning algorithms can vectorize faces… … so, why not proteins?         … The U.S. Department of Energy …
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Complete Genome Sequence of Desulfurococcus fermentans, a Hyperthermophilic Cellulolytic Crenarchaeon Isolated from a Freshwater Hot Spring in Kamchatka, Russia
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on … show how soil microbes cycle nitrogen and carbon, or how freshwater ecosystems process methane and organic matter.  … a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required …
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Maureen Berg
… developing new high-resolution and high-throughput methods to link uncultivated viruses to their host. With these new methods, she hopes to expand … that viruses play in their ecosystems, particularly in freshwater ecosystems. …
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The Genome Sequence of Methanohalophilus mahii SLPT Reveals Differences in the Energy Metabolism among Members of the Methanosarcinaceae Inhabiting Freshwater and Saline Environments
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Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites
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Low Mutation Rate and Atypical Mutation Spectrum in Prasinoderma coloniale: Insights From an Early Diverging Green Lineage
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Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus
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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings together established and emerging scientists from academia, … will present both a genome center talk and a tech talk. Stop by the JGI booth to learn about our user programs and …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to … on developing plant functional genomic resources (e.g. sequenced mutant collections, transformation technology, … trajectory: gradual evolution characterizes distinct lineages of allotetraploid Brachypodium. Genetics, 223 (2), …
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Genomic Comparison of Two Family-Level Groups of the Uncultivated NAG1 Archaeal Lineage from Chemically and Geographically Disparate Hot Springs
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