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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), and collaborators across multiple … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Mining Metagenomes for Cas Proteins
… JGI’s IMG/M database and biochemically characterized at UC Berkeley and the Innovative Genomics Institute.  The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short … graduate student from study senior author Jennifer Doudna’s lab, and he worked with co-first author David Burstein, then …
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A Powerful Technique to Study Microbes, Now Easier
… Lawrence Livermore National Lab biologist Jennifer Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots to help process experiments that measure microbial activity in soil. Now, the researchers and robots have made these …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 … onsite at the Integrative Genomics Building at Lawrence Berkeley National Laboratory (Berkeley Lab) as well from across the globe via … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the …
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Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing
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TbasCO: trait-based comparative ‘omics identifies ecosystem-level and niche-differentiating adaptations of an engineered microbiome
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Corals in Hot Water Get Help From Their Microbes
… As waters warm due to climate change, corals are in mortal peril. But corals comprise multiple organisms: a coral host, a photosynthetic microalgae, and a little-characterized … When warm waters stress corals, it might be their microbes, including their photosynthetic partner, that help …
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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Using a single-cell screen, they … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … raphanica, which has been able to adapt to habitats from Alabama to Brazil, suggesting that the same decay-related … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers … elements like viruses spread their DNA, they can affect how microbes cycle nutrients and adapt to climate change. …
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Omics analyses and biochemical study of Phlebiopsis gigantea elucidate its degradation strategy of wood extractives
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