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Secondary Metabolites Advisory Committee
… The SMAC is chartered by the Secondary Metabolites Program Head and report back to them. The Committee is … on the effective management and strategic objectives of the programs. The Committee serves as the Program's key external advisory panel and as advocates of …
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Natural Prodcast Episode 11: Marnix Medema
… at the time called Genbiotics , which was a large program to find novel antibiotics. And this particular … there to find new antibiotics. And, as many projects in bioinformatics, what, something that was born out of … there is many. I would say, perhaps, half of or more of the users of antiSMASH are not in this field either. So they …
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Protocol for single-cell isolation and genome amplification of environmental microbial eukaryotes for genomic analysis
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JGI Portals
… GOLD is a web resource for comprehensive access to information regarding genome and metagenome sequencing … potential, antibiotic resistance genes, and ecosystem information. … tools for comparative genomics of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to …
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Natural Prodcast Episode 3: The Primer, Part 3
… and it’s a little hard to find in print, but we live in the information age and the ebook version is available at most … we need partners. And so the Secondary Metabolites Science Program is three people! We’ll use a lot of the technology … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You …
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Natural Prodcast Episode 1: The Primer, Part 1
… Genome Institute, or JGI. JGI is a DOE Office of Science User Facility located at Lawrence Berkeley National … started and leads the JGI’s Secondary Metabolites Science Program, which I was hired into, and my job is to do cool … why we want to do this. And also to provide a little more information and context for people who might possibly be …
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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software includes: gRNA-SeqRET , … Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well …
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A More Intuitive Phytozome Interface
… been under active development for over 5 years, provides users with the genome browsers, gene pages, search, BLAST … bookmarked v12 links (e.g., to gene reports and organism information pages) will be seamlessly forwarded to Phytozome … BioMart data warehouse). We are still working out the best protocols to allow us to update PhytoMine and keep it …
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Natural Prodcast Episode 22: Alison Narayan
… And so we wanted a profile across that protein family to sample that sequence space and have as diverse of a protein … to do in lab is watch our robot. So we have a very simple, programmable robot, which is essentially a little arm with a … the substrate scope of many enzymes. And so we have limited information. There’s a lot of work to do, and that makes …
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Ecosystem Fabrication (EcoFAB) Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions
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JGI & KBase at PAG XXVII
… how to apply for a project with the JGI Community Science Program, and how you can use the KBase system to accelerate … biology. Researchers who are applying genomic sequence information to BER-funded activities of plant systems that … work. BER Plant Genomic Science Workshop Agenda: 6:20 PM Overview and Joint Genome Institute Plant Program Update …
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Philympics 2021: Prophage Predictions Perplex Programs
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