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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model … involved in adaptations seen in later plant lineages. The team found that some of the adaptation strategies used by … studies. Its place among early-diverging plant lineages makes it ideal for comparative genomics studies, offering …
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Dispatches From JGI Interns
… with JGI mentors. In this episode, hear two interns from the 2021 cohort describe their deep dives into genomics, computational tools, and big data.  …
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River microbiomes from around the world: Kelly Wrighton
… Kelly Wrighton and her group at Colorado State University in Fort … sequencing the world’s river microbiomes. And they’re using team science to do it.   …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at … The sequences were then biochemically characterized by a team led by Jennifer Doudna’s group at the University of … to accurately edit genomes (that is, repair gene mutations, and either delete or add genes in a precise fashion) …
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Nick Everson
… Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human Resources, … departments. He previously served as JGI’s Business Manager from 2007 to 2012, overseeing all financial and logistics … have an impact on management of the JGI.  In addition, he makes decisions or final recommendations on operational …
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Data Ecosystem
… users through a BER data ecosystem.  A data ecosystem is a connected resource where data from different organizations is discoverable and accessible. Linking the resources of … specifically optimized for high-performance computing environments. … to seamlessly access and analyze data on scales ranging from single genes and individual genomes to metagenomes to …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute … a condition known as polyploidy. The multiple copies arise from past genome duplication, which occurs in two basic … genome doubling. In allopolyploids, the set of chromosomes from each ancestor is called a subgenome. Session and …
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JGI@25: Stories from Intern Alumni
… 2022 marks the JGI’s 25th anniversary . Over the next few months, we’ll be revisiting a number of notable achievements … Over the past 25 years, the JGI has hosted interns from a number of universities and organizations. From field research and wet lab experiments, to …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in … covering the entire kingdom of fungi. “The information from this project may also have a practical relevance with … about what it means to be a scientist. “To see how team science is done at an advanced and large research …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network of … at Arizona State University, which archives and makes available for research over 100,000 samples and … are due March 17, 2021 for the FICUS proposal call. Q&A from the Webinar: Q(uestion): Can I apply as a postdoc, or …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm microbial diversity is … at protein function within them. The work was led by a team of scientists at the U.S. Department of Energy (DOE) … ‘Dark Matter’ Microbial communities living everywhere from soils and stomachs to the deep sea are capable of doing …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant … in the complex organic matrix of the forest floor, a team of researchers have found that there is a striking … suggest that fungi are breaking down plant fibers, like cellulose and lignin. Bacteria, on the other hand, appear to …
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