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David Goodstein
With a background in experimental and computational surface physics, Dr. … on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to the Human … regions of interest and gene copy number variation across multiple genomes.  eLife 11, e78526. Li et al., 2021.  Plant …
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Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
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Role of diversity-generating retroelements for regulatory pathway tuning in cyanobacteria
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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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Successional adaptive strategies revealed by correlating arbuscular mycorrhizal fungal abundance with host plant gene expression
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Modulation of Plant and Fungal Gene Expression Upon Cd Exposure and Symbiosis in Ericoid Mycorrhizal Vaccinium myrtillus
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Significant Alteration of Gene Expression in Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium by Plant Species
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How Microbes Can Protect Plants in Drier Straits
A mini-episode looking at the efforts of Pankaj Trivedi, whose New Investigator proposal was recently approved through the JGI … Science Program, to use microbiome science to help make plants more resilient to drought. …
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Natural Prodcast Episode 9: Roger Linington
… of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser University in British Columbia, … America brought to the UK? ROGER:  Yeah, it’s difficult to generalize, of course, but I felt overall that the British … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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JGI@25: The Little Alga That Could
… of both plant and animal cells, it shares nearly 7,000 genes with other organisms (a third of those shared by both … would go on to work on research that identified signaling pathways in Chlamydomonas.   So, Merchant was primed to … and Marina Cvetkovska of the University of Ottawa on the multi-omics of arctic-growing Chlamy. Merchant continues to …
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A Complex Confection Decoded: Sugarcane Reference Genome
… reference quality genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science … in  Nature by an international consortium. With the genetic code of sugarcane, researchers were able to map the … Many plants, sugarcane included, are polyploid and have multiple copies of chromosomes. Sugarcane accounts for 80% …
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Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication
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