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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … the JGI has pioneered, including single-cell genomics and metagenomics. The GEBA initiative has also utilized a very … with nearly 5,000 publicly available ones and 1,100 metagenome-assembled genomes (MAGs) reconstructed from …
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How Filamentous Fungi Sense Food
… crassa . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … fungus  N. crassa , a team led by N. Louise Glass at the University of California, Berkeley and her postdoctoral … We acknowledge the use of deletion strains generated by Grant P01 GM-068087 …
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Toward More Efficient Artificial Photosynthesis
… Planck Institute (MPI) for Terrestrial Microbiology and the University of Bordeaux have developed a platform that mimics … composition variants. Summary In the  May 8, 2020 issue of  Science , a team led by Tobias Erb, director of the MPI … French Government ‘Investments for the Future’ Programme, University of Bordeaux Initiative of Excellence (IDEX …
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Triggering Morel Fruiting
… A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … in France and Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … until Ronald D. Ower, a researcher from San Francisco State University, developed a technique to successfully obtain …
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Adam Reisselman on being a 2016 DOE Computational Science Graduate Fellow
… The Department of Energy's Computational Science Graduate Fellowship (DOE … meet the Nation's growing need for science and technology professionals with advanced computer skills. During the summer … of 2016,  DOE CGSF recipient Adam Riesselman of Harvard University worked with DOE JGI's Sam Deutsch. Learn more …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired … possibility to reach out to anyone in the Institute to get feedback and insights on the project and everyone’s … Brenda Yu Class Year: 1st year graduate student at Stanford University in the Biophysics program. (Graduated from UC …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers … switchgrass ( Panicum virgatum ) is a candidate bioenergy feedstock with a complex genome with multiple copies of its … In Nature Communications , a team led by Tom Juenger at the University of Texas (UT) at Austin and including researchers …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, … Wang and Science Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant professor … and hard work have carried it through the difficult early stages, so I can begin biological analysis of the data sooner …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … complex wiring behind a city’s power grid. Just as the flow of electricity controls when and where lights turn on or … processes.  Traditionally, mapping this intricate network of regulatory “switches” in plants at a large scale was akin …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the … were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  … The study was led by Rick Cavicchioli, professor at the University of New South Wales, Australia, and included …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose debris, mobilize nutrients from that … to trees; plant pathogens colonize living plants to feed on them.  Across the forest types, Martin and his team …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… JGI interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  … The approved proposal from  Alex Harkess of Auburn University started as a small-scale white paper focused on … JGI Flagship Plant , of interest as a candidate  bioenergy feedstock . John McKay of Colorado State University is …
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