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Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and current PhD student, … synthetic biology fields. In a living cell, triplets of nucleotides, or codons, dictate which amino acids are … that help to explain their work and its impacts at Berkeley Lab and beyond. Last summer, Wint hosted a virtual …

… a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) through the JGI … zinc-binding proteins are important for primary metabolism such as photosynthesis and gene regulation.  Mock and his … latitudes from pole to pole, using metatranscriptome and metagenome data from the JGI. With multiple threads of …

… years, the DOE Joint Genome Institute hosted several UC Merced students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with excitement … Theo Loreaux and mentors Simon Roux and Frederik Schulz, Structure Prediction to Annotate Novel Viruses: the Case of …

… plants multiply. Over time, plants lose many genes after such events, returning their genomes to a diploid state while … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), relied on a … two species in the pan-genome . Typically, pan-genomes are much larger than any individual genome highlighting the fact …

… of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … To overcome this hurdle, a team led by Bernhard Fuchs and his postdoctoral researcher Anissa Grieb at the MPI … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) to develop a …

… by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the sugarcane cultivar R570 … conversion technologies for  biofuels and other bioproducts. Finally, understanding how brown rust disease … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), with assistance …

… a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), and … families known up until now, and identified many novel structure predictions,” said lead author on the paper Georgios … (IMG/M) database, they successfully crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now …

… symbiotic interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), as well as … Huberiarchaeum would help fill in metabolic weaknesses. In such cases, these DPANN hitchhikers likely form a mutualistic …

… and visualization of large amount isolate genomic and metagenomic data stored in Oracle databases, Berkeley DB and files in various formats. …

… one of the following focus topic areas: Biofuels and bioproducts, Biogeochemistry, and Inter-organismal interactions. … proposals selected with four focused on biofuels and bioproducts. For example, Sabeeha Merchant of the University of California, Berkeley studies the alga  Chlamydomonas reinhardtii , one …

… this to untangle which microbes ate the compound and how much they ate.  These analyses provide granular insight into … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). “By offering … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host …