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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… scientists usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. For years, … genomes from microorganisms are shotgun (group) metagenomic sequencing and single-cell (individual) … like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… some songbird W chromosomes — suggest that they are advantageous enough to have evolved multiple times independently. … by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to LBS, and DEB-1542599 to M.O.). Support was also …
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How to Target a Microbial Needle within a Community Haystack
… of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … allow researchers to focus on specific microbes within metagenome samples and associate their sequences with their … User Facility, is supported under Contract No. DE-AC02-05CH11231. This study was funded by the Max Planck Society. …
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Introducing New Members of the JGI User Executive Committee
… and can serve no more than two consecutive terms. In late 2021, the JGI launched a solicitation for nominations for … a breadth of institutions, research topics and career stages. The election period concluded on December 23, 2021. …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close …
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Fishing for Novel Cellulose Degraders
User Facility, is supported under Contract No. DE-AC02-05CH11231. The work was supported by a JGI Director’s Science … and Environmental Research, through contract DE-AC02-05CH11231 between Lawrence Berkeley National Laboratory …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… … The work (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) conducted by the US Department of Energy … US Department of Energy operated under contract no. DE-AC02-05CH11231. This project received funding from the European …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive isotope … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like …
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Building Sphagnum Genomic Resources
… matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high latitudes, … and the University of Vienna  reported recovering draft metagenome-assembled genomes for seven novel species of … of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. For the sphagnome project, germplasm …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… a genus of just under 400 mosses that can carry up to 25 times their dry weight in water, makes up the … these ecosystems. … The work (proposal no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the US Department of … User Facility, is supported under contract no. DE-AC02-05CH11231. …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would …
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Learning to Look
Waldo will have all of these features. As described July 22, 2019, in  Nature Microbiology , a team led by scientists … use to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 …
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