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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm microbial diversity is … falls within that single beam. When it comes to microbial communities, scientists have historically been unable to see … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire genetic …
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The genome of Syntrophorhabdus aromaticivorans strain UI provides new insights for syntrophic aromatic compound metabolism and electron flow
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Next generation sequencing data of a defined microbial mock community
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with names — …
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Natural Prodcast Episode 1: The Primer, Part 1
… – problems that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, … of that, that most people, I think, believe now is that the communities where this happened have a tendency to be … in partnering with us, we want to hear from you! We have projects in genome sequencing, DNA synthesis, …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… look back at the JGI’s history, from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their talks … support understanding of plants, microbes and environmental communities that have relevance for DOE’s bioenergy and …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… surface is reconstructed by combining a study of microbial communities (metagenomics) and a chemical labelling … (Nachwuchs-gruppe “Dr. Alexander Probst”), and the NOVAC project of the German Science Foundation (grant number DFG … i.e., by Harald Huber and Sebastien Ferreira-Cerca, and sequencing of MSI metagenomes within the Census of Deep Life …
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … (HOT), they collected samples of the ocean’s microbial communities periodically at different depths. In order to … out that, without the JGI, the discoveries made in this project wouldn’t have been possible. Scientists hadn’t known …
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JGI-USCCN Strain Sequencing Opportunity
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
These biodiversity hotspots harbor specialized microbial communities living in extreme conditions. The microorganisms … organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. Department of Energy Joint … was done under Contract DE-AC52-07NA2734. Funding for this project was provided by the U.S. National Science Foundation …
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Community standards and future opportunities for synthetic communities in plant–microbiota research
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