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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… hitchhikers. These organisms are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … ) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… help solve energy and environmental challenges.   The Human Genome Project began in 1990 when the U.S. Department of … was being waged. In the JGI@25 video below, Susan Lucas, former JGI Production Department Head and current ESnet … Center, JGI staff worked around the clock to generate the sequences of these three chromosomes. In 2004, they …
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Better Genome Editing for Bioenergy
… tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it … included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … , the scientists thus set out to identify which sgRNA sequences were reliable. In an elegant, quantitative screen, …
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Doubling Down on Known Protein Families
… of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is … the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have … ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has …
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Data Ecosystem
… users through a BER data ecosystem.  A data ecosystem is a connected resource where data from different organizations is … biology. The collaborations present exciting possibilities for scientific exploration, granting access to diverse … way. We also work with our partners to ensure platforms are future-ready for advancements enabled by …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden … Australia but is increasingly farmed in other countries for essential oil production. The recent assembly of two … list of putative genes from C. citriodora to known TPS gene sequences from Eucalyptus species and other plants. The …
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm … plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. …
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The Science … model system focused on carbon cycling studies, rather than for food or fuel applications. The Impact Sphagnum’s impact … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into … Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea … of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a … clearly. The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better …
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