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Accelerating Metagenomics Discoveries with Deep Learning
… Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 … on generating vector representations of proteins in order to conduct more efficient protein sequence alignments. … sequence identity may belie. The technology he’s using is magical; transform any length of amino acid sequence into a …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research … transcriptome projects such as Expression Atlas and PPRD could help with understanding gene functional roles, but …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have … source of both protein and oil was also the largest plant project completed by the JGI. It has since been cited more … In addition to supporting work on the soybean plant in order to maximize yields for biofuel, the JGI has also helped …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, … and sugars. How photosynthesis works, though, is much harder to pin down.  Photosynthesis appears to have a lot in … — but the experts we were able to work with on this project to ask questions about structure and function,” …
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User Support Analysis Group
… for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and … the development of automated analysis pipelines for standard sequencing products performed at scale. Our group also …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have … to be removed. All told, the disease has accounted for upwards of $30 billion in losses , including the death of tens … engagement activities under the umbrella of the SOD Blitz Project. In hopes of controlling the spread of the disease, …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … be on a pretty regular schedule for a while. Moving forward, I’m hoping to get a new one out every two weeks. This … benefits. DAN: Now, you and I are working together on a project at the JGI to try to find new enediyne clusters and …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of … presents researchers with a sampling puzzle of extraordinary complexity. Beyond the sheer number of undiscovered … of scientists. Initiatives like our 1000 Fungal Genomes Project established crucial phylogenetic frameworks spanning …
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Natural Prodcast Episode 19: Bill Fenical
… of natural products, Professor Bill Fenical from Scripps Institution of Oceanography in San Diego. Bill is a pioneer … to microbiology, about drug discovery and why it’s so hard to succeed, and we talk about an ongoing project I’ve been working with him on as an exploration into …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, … environments have detected viruses outnumbering hosts by orders of magnitude, the team found that in the microbial mat, the … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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The endosymbiotic box of protective tricks
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Natural Prodcast Episode 21: Elizabeth Parkinson
… right. Welcome back to Natural Prodcast. I did it. I’m keeping to my schedule. This should be coming out on the first … I’m really not good at that, you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. … pathways, which led her to a successfully funded JGI CSP project. And we also got to talk about work at her …
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