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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  … at the University of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways … We acknowledge the use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis of a Model Filamentous Fungus” and that are publicly available at the Fungal …
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Yasuo Yoshikuni
… Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of DNA synthesis, strain engineering, … Yasuo Yoshikuni is the DNA Synthesis Science Program Head at the JGI. Click to learn more about the program's areas of focus, major …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural … of primary metabolism. So a lot of the genes and the DNA that’s used for secondary metabolism, they are copies … Episode Transcript … This the second episode of Natural Prodcast, which continues a conversation from the …
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data … advances in sequencing technologies and computational approaches, more and more virus sequences are being … have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of …
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Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
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j5 DNA Assembly Design Automation
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DNA Scanner: a web application for comparing DNA synthesis feasibility, price and turnaround time across vendors
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to …
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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … annotation due to features like self-splicing introns and multiple genetic codes. Adding to the challenge, … analysis beyond the reference set, using two additional approaches. To search environmental data, they developed a …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a …
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