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Gene-rich UV sex chromosomes harbor conserved regulators of sexual development
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Pinning Down a Piece of Photosynthesis
… protein parts of that machine — photosynthesizers’ DNA and RNA. These sequences provide a list of machine parts, and an idea of … experiments, so she could glean information about their specific function, filling in our understanding of …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling … school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer … researchers walked students through the processes of DNA sequencing, metagenome assembly, and even an introduction to …
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Model Fern Reveals Insight into DNA Thievery in Ferns
… fern’s distant cousin. Ceratopteris richardii, or C-fern, specifically has been studied in plant research laboratories … richardii marks the first published manuscript of a genome sequence generated through the OGG. For a long time, C-fern … and associated methylome, transcriptome and metabolome analyses for C-fern that was able to shed some light on the …
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Project Management Office
The JGI Project Management Office carries out a number of activities to facilitate … to onboard users and guide them through the process of working with our facility. This includes help with: preparing a … approved proposal – including the submission of samples for sequencing, or the submission of sequencing data for …
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New Research Sheds Light on Diversity in the Deep Sea
… found at each site and the role they fulfilled suggest that specific environmental conditions — like temperature, pH … Berkeley National Laboratory, contributed metagenomic sequencing to the study as well as  genome analysis, … (IMG/M) portal. The study,  published in the  Microbiome journal, broadens our understanding of the unique …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … virus sequences vary widely. In a previous effort, an international consortium recommended specific guidelines and best practices for characterizing …
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The Surprising Structure of a Shrub Willow Sex Chromosome
A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, … first time, the sex chromosomes of shrub willow have been sequenced with sufficient resolution to analyze their … at West Virginia University (WVU), led the study’s international team, which included scientists from Oak Ridge …
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The minimum information about a genome sequence (MIGS) specification
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk … DNA could be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …
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