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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … MARC: Well, I’m really biased and I like the bugs in the microbiome. So a lot of my work is as focused on insects As … an expertise in those two fields and the ability to process samples at scale. So, lots of samples. ALISON: Yeah, how …
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … a member of the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out that despite all … recover MAGs by extracting data directly from environmental samples over the years have significantly expanded the known …
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Improving Microbial Genome Annotations in an Integrated Database Context
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … Viral Genomics Group Lead at the JGI.  To understand the microbiome systems underpinning a broad range of … ecosystems. Viruses rarely grow well in environmental samples brought back to a lab, because they often need …
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Homepage
…   Gain access to omics technologies generating community data at zero cost —  submit a proposal.  … Our homepage video includes external footage from: University of Delaware; Laura.Selbmann©PNRA. All the sampling …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of … Additionally, they compared metagenome data generated from samples collected at four Rauer lakes to assess population … are available through JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) platform. These data allowed researchers …
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iPHoP: A Matchmaker for Phages and their Hosts
… With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … it predicted many more likely hosts for viruses in human microbiome samples, reflecting factors such as the quality and number … This work was supported by the U.S. Department of Energy, Office of Science, Biological and Environmental …
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IMG: the integrated microbial genomes database and comparative analysis system
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, … viruses — to support scientists around the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look like … growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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The Genomic Standards Consortium
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