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Fine Mapping of the Bsr1 Barley Stripe Mosaic Virus Resistance Gene in the Model Grass Brachypodium distachyon
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DOE JGI Interns Share Their Summer Experiences
This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching … worked with Zhong Wang while Karen Tolentino worked with Brachypodium researcher John Vogel. Other students hosted …
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CSP New Investigator Call
… is for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead … an unlimited number of proposals).  For accepted proposals, sequencing, synthesis, metabolomics and analysis will be …
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Three Join the JGI User Executive Committee
… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of … Wilbanks has served on review panels for the JGI’s Functional Genomics CSP and the JGI-EMSL FICUS programs and … in metagenomics and novel applications for long-read DNA sequencing. As a UEC member, Wilbanks will advocate for …
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Genome‐wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon
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SECONDARY WALL ASSOCIATED MYB1 is a positive regulator of secondary cell wall thickening in Brachypodium distachyon and is not found in the Brassicaceae
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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … genes are turned on is known as DNA affinity purification sequencing or DAP-seq. The technology was developed by Ronan … there is no shortage of fungal genomes anymore, but their functional interpretation is as tough as it has been 10 …
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … which was a very early genome mining company, back when DNA sequencing of natural product pathways was hard and … ATP synthase.” On everninomicin biosynthesis: “EvdS6 is a bifunctional decarboxylase from the everninomicin gene …
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives … (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was …
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N-dependent dynamics of root growth and nitrate and ammonium uptake are altered by the bacterium Herbaspirillum seropedicae in the cereal model Brachypodium distachyon
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JGI Earth Month: Wetlands Work in #TenHundredWords
April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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JGI Announces 2025 New Investigator Portfolio
You, Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the JGI searches for novel research projects from PIs who have … such as metatranscriptomics and environmental DNA sequencing to explore microbial and plant interactions …
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