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A 34K SNP genotyping array for Populus trichocarpa: Design, application to the study of natural populations and transferability to other Populus species
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my first publication and it feels so rewarding,” Wint said. For Axel …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and … in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … impact the planet’s nutrient cycles. While most organism’s genetic information is encoded in DNA, with RNA delivering …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four … help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms that SAR324 and other microbes use could inform scientists’ understanding of carbon fluxes in the …
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Styling for Safety: PPE, It’s the JGI Way
… PPE or Personal Protective Equipment is worn to minimize exposure to hazards that can cause workplace injuries and illnesses.  PPE … we launched a PPE Campaign to provide our colleagues with a visual representation of JGI PPE requirements. When working … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Viral Genomics Group
… Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under … While an ever-increasing number of phage and virus genomes have been assembled and reported from … Multiomics approaches such as metagenomics and metatranscriptomics …
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Analyze Data
… The JGI supports the entire data life cycle — from experimental design to reuse. Armed with … We have two key priorities:  The JGI is involved in efforts to integrate data in support of new research questions … Chief Informatics Officer …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under …
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Rex Malmstrom
… Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever … isolating individual bacterial cells and amplifying their genetic material, thus bypassing the need to culture these … Ph.D. in Marine Biology/Biochemistry, University of Delaware BA in …
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