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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … next firestorm. The majestic sentinel oaks of the Golden State have been succumbing to a pathogen. This ‘“alien’” … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Frederik Schulz
… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His research … discovery pipeline and enrichment metagenomics for terrestrial protists. These approaches enable novel … B.Sc. Biochemistry, University of Applied Sciences Mannheim (Germany) M.Sc. Molecular Microbiology, University …
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Accelerating Metagenomics Discoveries with Deep Learning
… from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Comparison of short-read and long-read metagenome assemblies in a natural soil community highlights systematic bias in recovery of high-diversity populations
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental … States. They also provided multiple access points to the information. The team harnessed a community-science program to collect samples from across the country to standardize the process. They noted this may be the first …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an … scale to produce biofuels . Since one of the challenges of developing alternative fuels from plants is the high cost …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent … methane as an energy source.  Until recently, our understanding of these methanogenic microorganisms was … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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Axel Visel
… Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. … Axel Visel is the JGI's Deputy for Science Programs. Click to learn more about our …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Next-generation transcriptome assembly
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