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Olpidium, The Key to the Origin of Terrestrial Fungi
… on Olpidium was from agricultural research. Several species of Olpidium are obligate endoparasites of some … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … known fossil record of land plants and evolved in early microbial biocrust environments.     …
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Accelerating Metagenomics Discoveries with Deep Learning
… Metagenomic data, or DNA sequencing data gathered from whole samples rather than single cells or isolated strains, … that low sequence identity may belie. The technology he’s using is magical; transform any length of amino acid … Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying …
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Tanja Woyke
… Woyke pursued her postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research … which she deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position … primary interest and passion. Dr. Woyke stepped into the Microbial Genomics Program Lead position in 2009 and assumed …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… microscopic water mold, genetically related to such aquatic species as diatoms and kelp. Dubbed Phytopthora ramorum … trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden … are desirable from a biofuels production perspective. By using genomic database alignment tools, researchers searched … data carried out by EMBRAPA as part of the  Corymbia  genome project was supported by FAPDF grant “Nextree” …
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DOE Metrics
… 179% 2,208 2,064 95.4% Q2 2026 175 243.806 139% 2,160 2,112 99.8% Q3 2026 175     2,164     Q4 2026 175     2,208   … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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SAR11 bacteria linked to ocean anoxia and nitrogen loss
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Diversity and biogeography of SAR11 bacteria from the Arctic Ocean
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Streamlining Regulon Identification in Bacteria
… sigma factors that initiate transcription in bacteria. Using this technology, which combines an in vitro … in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions … assay. The second step consists of RNA sequencing of whole transcriptomes, and the third is determining the …
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