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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … applications, Wint also developed and tested a gene sequence-based predictor of gene expression levels using …
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Toward a standard in structural genome annotation for prokaryotes
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Jane Grimwood Named HudsonAlpha Genomics Chair
Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! Loretta Spencer served as a manyterm … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 Nature paper announcing a high-quality reference sequence of the complex switchgrass genome , using samples …
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From Competition to Cooperation
… fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently …
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Marine Microbe Contains Multitudes
… help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms … of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts (metagenomes, …
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Microbial species and intraspecies units exist and are maintained by ecological cohesiveness coupled to high homologous recombination
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JGIota: Looking Back at Sequencing for Soybeans
So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into soybean’s …
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JGI on the 2020 Highly Cited Researchers List
… highly-cited papers that rank in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 … that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  Nature … to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples around the …
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Improving Microbial Genome Annotations in an Integrated Database Context
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The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes
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Intra‐species genetic variability drives carbon metabolism and symbiotic host interactions in the ectomycorrhizal fungus Pisolithus microcarpus
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