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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and expertise. These collaborations have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data …
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Improving the Cacao Genome and Phytozome
… fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … released by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … Pacific Ocean, or in the bay, and be able to do chemical analysis, as well as transcript analysis. And what we’re … This is episode 5 of Natural Prodcast, our conversation with Brad Moore, a …
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Mapping the Earth’s Hidden Fungal Kingdom
… Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … databases like MycoCosm , the JGI’s online fungal genomics resource platform, reveals a stark imbalance. More recently …
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John Vogel
… years where he was a driving force behind the development of numerous genomic resources that fostered the widespread adoption of … techniques) and utilizing these resources to understand genome organization and regulation, abiotic stress … manipulation in the laboratory because of its compact genome, diploid nature, self compatibility, rapid generation …
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Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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Metabolomics Technology Group
… Our lab is using mass spectrometry based metabolite profiling to provide direct biochemical datasets to improve our understanding of microbial metabolism. Of particular interest is …
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Best Practices for Successfully Writing and Publishing a Genome Announcement in Microbiology Resource Announcements
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