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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … viruses in Earth’s deep subsurface. They are abundant representatives of deep subsurface ecosystems. A team of … researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst lab used to search …
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Community-wide plasmid gene mobilization and selection
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Meeting Code of Conduct
… All participants and staff of JGI events are required to adhere to the following Code … and positive experiences for everyone. We are dedicated to providing a harassment-free environment for everyone. We do …
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Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
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Sequencing Submission Requirements for DNA Synthesis
… When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … How To Create an Annotated GenBank File There are several easy-to-use …
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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial … surface, to the blue-lit twilight zone, to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. … on the JGI Integrated Microbial Genomes & Microbiomes (IMG/M) system . By analyzing the metagenomes, …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of … MycoEd receives organizational and developmental support from KBase (The … Myco-Ed is supported by the JGI Director’s Science Program award #509937. SB was supported by the National …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where … nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and … B.S in Biomedical Engineering, Johns Hopkins University; Ph.D. in …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully crafted the Novel Metagenome … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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