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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for … Amplification (PTA) yields a much higher completion, above 80% in most cases. The Impact PTA is a refined capability … of Energy Joint Genome Institute (https:// ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by …
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RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes
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IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
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SoyDB: a knowledge database of soybean transcription factors
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  Community Science … range of environments. A similar proposal focused on diatom genomes from  Thomas Mock of the University of East Anglia …
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Accelerating Metagenomics Discoveries with Deep Learning
… shared their works-in-progress with 86 participants in an online workshop to harness deep learning for metagenomic … by applying them to sequencing data. At the workshop, Volkan Sevim, a computational biologist at the US Department … using HMM profiles of protein domains from the pfam database to test the efficacy of a particular kind of deep …
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Forest Fungi, Seagrass, and a New View of Symbiosis
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Alabama Agricultural & Mechanical University Internship Program
… program between Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students spent … Our interns say their experiences allowed them to:  Learn new skills. Experience industry-level work and coding. Receive mentorship, network and gain …
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A new view of the tree of life
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… next firestorm. The majestic sentinel oaks of the Golden State have been succumbing to a pathogen. This … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … Science News of the Day: Stokstad E. Genetics. Genomes highlight plant pathogens’ powerful arsenal . …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured … Kuhn in his 25th Anniversary presentation. “Those driven by new tools and those driven by new concepts.” Patrinos went … fold: How much JGI’s productivity has increased since 1997. What took the JGI one year to do in 1997, now takes …
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