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Identification of ancient remains through genomic sequencing
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MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) … deep learning, a branch of machine learning, data is passed through algorithms organized into multiple interconnected … proteins to become much simpler; instead of aligning sequences with popular, but computationally costly …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… of countering multiple attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria … foreign genetic elements by incorporating short sequences from infecting viruses and phages. In these sequences are …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… data sets of RNA sequences (metatranscriptomes) generated from diverse environmental samples around the world, … in achieving higher quality results compared to smaller individual efforts. This is also the type of synergistic and … datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into …
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MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, … much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are …
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Disclaimer
… NOTICE Information from this server resides on a computer system funded by the … With respect to documents available from this server, neither the United States Government nor … so, for U.S. Government purposes. All documents available from this server may be protected under the U.S. and Foreign …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… and eukaryotes, and they range in particle and genome size from small, to large and even giant. The genomes of giant viruses are on the order of 100 times the … Program . The team mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the …
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MeCorS: Metagenome-enabled error correction of single cell sequencing reads
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Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics
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