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Comparative Biochemical and Structural Analysis of Novel Cellulose Binding Proteins (Tāpirins) from Extremely Thermophilic Caldicellulosiruptor Species.
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j5 DNA Assembly Design Automation
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … a widely used automated annotation tool missed at least one core gene in nearly half of those same genomes. The team … set, the same 15 core genes — 14 encoding energy-production proteins plus one ribosomal protein gene — were present in …
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Chapter One Structural, Mechanistic and Genomic Insights into OCP-Mediated Photoprotection
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … of living. The Impact Microbes help regulate the global carbon cycle — fixing, transforming, and respiring carbon. … This research was supported by grants from the Simons Foundation …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … into how soil viruses , and in particular a chitosanase protein, can contribute to soil health. He also contributed … a haystack — until now. Scientists have recently created a computational pipeline that scans specifically for RNA virus …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … of the SOD problem throughout the state, the UC team designed a set of engagement activities under the umbrella … a solution that bolsters the immune system of oaks and enables them to fend off the effects of infections. As SOD …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  … break down the wide array of simple and complex components present in plant biomass. This is of interest for … used in the biotechnology industry to produce enzymes, proteins, and other chemicals. Summary Filamentous fungi are …
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art … function.  The emphasis is on projects leveraging JGI’s Biodesign and ‘omics capabilities to enhance understanding of … All proposals will be externally peer-reviewed for scientific merit, …
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SBOL Visual: A Graphical Language for Genetic Designs
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under …
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The Orange Carotenoid Protein: a blue-green light photoactive protein
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