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Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Congratulations to the 2023 Highly Cited Researchers from the JGI … influence in their chosen field or fields through the publication of multiple highly cited papers during the last … Nature Plants study identifying colonization patterns in eelgrass . Igor Grigoriev’s recent work includes the discovery …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … in genomics. Enter GenomeOcean, a powerful generative model  now available to the global research community able … available data, GenomeOcean employs artificial intelligence for cutting-edge genomic research — and is capable of …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… DAN: All right. Welcome back to Natural Prodcast. I did it. … not good at that, you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m … sensing within a single species. DAN: Within a species. Genus? BETSY PARKINSON: So we don't know yet. DAN: Yeah, OK. …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … fungal mitochondrial genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science … kingdom, they are well-suited to train machine learning models that predict biological traits from DNA sequences. …
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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of … quantity and quality has been the rate-limiting step for many projects at the JGI. The quality of the starting …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome … on a few species like Arabidopsis or rice as homology models for computational function predictions and also due … from two ecotypes of  Panicum hallii and multiple switchgrass ( Panicum virgatum ) experimental data. Sarah:  How …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … will help solve energy and environmental challenges. Switchgrass is a native, shrubby grass that can grow … the genomes of two varieties of a close relative and model species. The following year saw the beginnings of …
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Comparative genomics of the genus Desulfitobacterium
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Tour the IGB
… Take a virtual tour of the IGB, home of the DOE Joint Genome … the frontiers of environmental and energy genomics.  For more information about the science depicted, click here . …
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Filling in the Plant Tree of Life
… What if we understood plants and how they adapt to their ever-changing environments … But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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