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BiG-SCAPE 2.0 and BiG-SLiCE 2.0: scalable, accurate and interactive sequence clustering of metabolic gene clusters
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Metabolic characterization of anaerobic fungi provides a path forward for bioprocessing of crude lignocellulose
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Approved Proposals
… Click the cards below to view a downloadable pdf of accepted proposals from previous fiscal years for our Community Science Program (CSP) as well as the Facilities Integrating Collaborations for …
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A novel open-source cultivation system helps establish the first full cycle chemosynthetic symbiosis model system involving the giant ciliate Zoothamnium niveum
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 … Lab. Like the mural, the JGI’s accomplishments over 25 years span a broad, colorful range. Behind every genomic …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … the intricate details of life’s genetic blueprint has long been a significant challenge in genomics. Enter … large metagenome projects — ultimately assembling over 220 Tb of sequences and obtaining 700 Gb of assemblies. The …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the … We acknowledge the use of deletion strains generated by Grant … available at the Fungal Genetics Stock Center. This work was supported by an Energy Biosciences Institute Grant, a …
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Strain Engineering
… The focus of this group, in recent years, has been to bring generalizable technologies to … For further details, please reach out to the Group Lead …
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N-dependent dynamics of root growth and nitrate and ammonium uptake are altered by the bacterium Herbaspirillum seropedicae in the cereal model Brachypodium distachyon
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Genome Insider
… The Genome Insider podcast brings listeners into the science that the JGI makes … and viruses. Listen in to explore the data that illuminates biology, and hear how it could power our future. …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive … find that our trees are incorrect or need to be changed, please contact us and we’ll work work it out 2.  Q(uestion): Do … Q: If we have RNAseq or proteome data that is based on a model that is not based on a genome model with PhycoCosm, …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and the … on genome editing has focused on the seminal CRISPR-Cas9 system, which targets double-stranded DNA. The discovery of … of Energy under contract no. DE-AC02-05CH11231. The work was supported in part by grants from the Paul Allen Frontiers …
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