Results

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
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Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation
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STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies
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FICUS-NERSC/KBASE
… discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems … collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in biological data science as part of the … The researcher then submits a proposal for consideration in the next review cycle. All proposals …
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Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… of standardized fabricated ecosystems (EcoFABs) designed for precise manipulation and reproducible experimentation of … dynamic interactions, offering an unparalleled platform for exchanging ideas, forming collaborations, and charting …
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Predicting the chemical space of fungal polyketides by phylogeny-based bioinformatics analysis of polyketide synthase-nonribosomal peptide synthetase and its modification enzymes
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome … Carlos Vazquez and mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching … I wasn’t familiar with in terms of machine learning and new software I’d never been using before. I also wanted to …
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The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness
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The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
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Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
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Virus species names have been standardized; virus names remain unchanged
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