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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new to the JGI. Projects must … FICUS proposal.   Competitive projects will provide pilot data to assess feasibility of a novel approach or form the … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
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Network Modeling of Complex Data Sets
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The parallelism motifs of genomic data analysis
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Natural Prodcast Episode 21: Elizabeth Parkinson
… DAN: All right. Welcome back to Natural Prodcast. I did it. I’m keeping to my schedule. … them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or online catalog, I guess. So we've also been able to get …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Micro-Scale Applications Group
… that utilize microfluidics/microdroplet technology in order to enhance the quality of single-cell genomes and directly … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical standards to accurately measure environmental microbiome activity …
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RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics
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Finding the Fermenters
… prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with … final dataset – available to the research community on an online interactive browser – contains the phenotypic records … these two isolates. The combined taxonomic and functional annotations were used to predict the final end products from …
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Sequencing Technologies & Products
… Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This includes scaling the technologies and … collaborations with Science Programs and Operations teams to enable the JGI’s focus on expanding molecular …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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A synthesis of bacterial and archaeal phenotypic trait data
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