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Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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Natural Prodcast Episode 5: Brad Moore
… and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution … then genomics happened. Dan: Yeah, I did my first genome sequence with you. Brad: That’s right,  Dan: JGI did it in … before you see toxin. And we have some preliminary data with other samples that we do see days to a week of a …
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A data analysis and coordination center for the human microbiome project
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Microbiome Data Science: Understanding Our Microbial Planet
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BAYESIAN SPATIAL-TEMPORAL MODELING OF ECOLOGICAL ZERO-INFLATED COUNT DATA.
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Integrative analysis of multimodal mass spectrometry data in MZmine 3
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A universal language for finding mass spectrometry data patterns
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Dealing with Drought: Uncovering Sorghum’s Secrets
… by a growing human population and increasing demand for agricultural products.  Sorghum bicolor (L.) Moench is … conventional food crops. For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be … 400 root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed that 10,727 …
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Fungal Friends or Foes in Plant Roots
… health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. … from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the collection. The team then compared this dataset against nearly 80 previously published fungal …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. … Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that the JGI … gene loss shape the BGC repertoire in most genomes. The BGC data will also soon be contained within the JGI’s Secondary …
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Natural Prodcast Episode 20: Brian Bachmann
… I wanted to tell you about in this introduction. First and foremost, our interview this week is with Professor Brian … And at the time, it was really exciting when people would sequence [DNA]. The genome was– well, that hadn’t really … a postdoc and went to industry to see what they had, what data they had. DAN UDWARY: And they had a lot of data for …
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