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Comparison of short-read and long-read metagenome assemblies in a natural soil community highlights systematic bias in recovery of high-diversity populations
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Natural Prodcast Episode 18: A CSP Primer
… round of episodes. If you stick around for the next few months, you’re going to hear my last interview with my … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. … we also have a lot of analysis pipelines, be it for, again, metagenome, metatranscriptomes for SNP analysis if somebody …
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How to Target a Microbial Needle within a Community Haystack
… make-up of specific uncultivated microbes from complex environmental samples. The Science A team led by researchers at … allow researchers to focus on specific microbes within metagenome samples and associate their sequences with their … Testing the HCR-FISH+FACS targeted pipeline on North Sea metagenomes as a proof of principle, the team used a …
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Data Ecosystem
… users through a BER data ecosystem.  A data ecosystem is a connected resource where data from different organizations is discoverable and accessible. Linking the resources of powerful institutions like the JGI, KBase, NCBI, NMDC, EMSL and the Protein … specifically optimized for high-performance computing environments. …
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Population ecology and biogeochemical implications of ssDNA and dsDNA viruses along a permafrost thaw gradient
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Microscopic Algae as New Emerging Models for Studies of Organic Biocrystallization and Vision
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Natural Prodcast Episode 22: Alison Narayan
… DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the … of them to be highly related to enzymes that we have been studying since day one in my lab that do oxidative … one of also the amazing things that we learned through this study is that our predicted ancestral proteins are much more …
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A robust enzymatic reporter system for the extremely thermophilic anaerobic bacterium Anaerocellum bescii
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Bacterial barcoding facilitates plant microbiome studies.
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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Metagenomics
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How To Use Our Systems
… One of the JGI’s key assets is our user community, … who use JGI resources and expertise. These collaborations have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data life …
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