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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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JGI@25: Roots of a Mutualist Relationship
… journal Nature . The mushroom has a symbiotic relationship with the poplar, a JGI Flagship Genome and the first tree to … (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal MycoCosm, …
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User Programs
CLOSED ONGOING ONGOING Who Should Apply? Investigators with research projects that integrate the expertise and capabilities of multiple user facilities Investigators with DOE mission-relevant projects that call for expansive … who have not been a PI on any approved proposal with the JGI Investigators interested in translating genomic …
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How Filamentous Fungi Sense Food
… a job site for a task that requires a flathead screwdriver with a full toolbox including Phillips and specialty … This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently published in the  … enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… in the sequencing for the Human Genome Project out to the future of the institution. Their talks shed light on how the … and Environmental Research “There are two kinds of scientific revolutions,” Ari Patrinos opened with this quote … a single proposal. From the vantage point of JGI’s 25 years fueling discovery, Anderson looked toward the JGI’s next …
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Fungal diversity notes 253–366: taxonomic and phylogenetic contributions to fungal taxa
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Exploring and Thinking Critically about Scientific Problems with JGI Interns
… their own goals to achieve, they constantly collaborated with each other on new ways of presenting and researching …
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The United States of America and Scientific Research
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Building a custom high-throughput platform at the Joint Genome Institute for DNA construct design and assembly-present and future challenges.
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… lead the Forest Pathology and Mycology Laboratory. Together with his colleague Douglas Schmidt and UC Davis professor … 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. Genetics. Genomes highlight plant pathogens’ powerful arsenal . …
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Examples: Successful LOIs & Submissions
… for User Science calls. These documents have been shared with permission from the PIs who drafted them.  … … soil carbon storage during simulated range shifts of plant-fungal symbionts … Elucidation of the gene regulatory … crops … Characterization of simplified soil communities with high and low carbon use efficiency across differing …
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The genome of Xylona heveae provides a window into fungal endophytism.
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