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Unveiling plasmid diversity in nature
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Phenotypic and genomic signatures of interspecies cooperation and conflict in naturally occurring isolates of a model plant symbiont
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Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization
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Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage
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Patterns and ecological drivers of viral communities in acid mine drainage sediments across Southern China
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into … methane-producing archaea likely played a key role in determining the composition of the Earth’s atmosphere and … by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) representing new …
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A One-Stop Shop for Analyzing Algal Genomes
… allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … play key roles in global carbon cycling, are sources of natural products, and have potential as biofuel feedstocks. …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … when we mapped the first sequenced RNA from the soil, only 10% of them were mapping to the fungal genomes at the JGI,” … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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UC Merced Interns Reflect on Their JGI Summer Projects
… Over the course of eight weeks this past summer, 10 students from UC Merced worked closely with JGI … — from implementing new data visualization tools, to using natural language processing techniques to categorize genetic …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… suggests, there is metal in the hills, and it has legacy mining that goes back more than 100 years. And in particular, there’s an inflow from the … you know, within my lifetime, we should hit around nine or 10, which is thought to be where we’re going to level off. …
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JGI@25: From Life at the Extremes to Editing Genomes
… JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … Systems Mol Cell. 2020 Aug 6;79(3):416-424.e5. doi: 10.1016/j.molcel.2020.06.022. Wright AV et al. A Functional …
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Axel Visel
… Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science … Laboratory and as an Adjunct Professor at the School of Natural Sciences at the University of California, Merced. … (UK),  Nature, Cell , Nature Genetics , Nature Methods ,  Genome Research (Editorial Board) , Cell Reports, Nature …
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