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MAGI: A Method for Metabolite Annotation and Gene Integration
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JGI@25: Roots of a Mutualist Relationship
… challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal Nature . The mushroom has a symbiotic relationship with the poplar, a JGI Flagship Genome and the first tree to … ecosystem perspective, involving more multidisciplinary teams. The work also paved the way for a longstanding …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an … head of the Hess Lab at UC Davis. “It was a really huge effort in tool development and … that was really the … You can learn more about how JGI data supports higher education in this JGIota , a Genome Insider podcast …
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Improving Microbial Genome Annotations in an Integrated Database Context
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The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes
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Revised Sequence and Annotation of the Rhodobacter sphaeroides 2.4.1 Genome
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Predicted structural proteome of Sphagnum divinum and proteome-scale annotation
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JGI Launches Latest Strategic Plan
For the Joint Genome Institute, the end of 2018 was marked … the JGI and KBase in the heart of the Lab’s 200-acre campus—with the big move from leased space in Walnut Creek, Calif. scheduled to begin a month later. In parallel with the intricate move preparations, the JGI has released …
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Data Ecosystem
… as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with … to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development … such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to enable …
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JGI Scientists Pen Genome Watch Articles
Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — and … Seshadri. Writing the  Nature   Reviews column all started with an email in 2018.  Tanja Woyke , who leads the  … Du Toit, senior editor for  Nature Reviews Microbiology, with an unusual opportunity: would JGI researchers consider …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit (GPU)-based high-performance computing resources, an upcoming hackathon led by … is a five-day coding event that offers participating teams the opportunity to either jumpstart acceleration or …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… grass that can grow year-over-year on marginal soil and with few resources. Despite the low maintenance, it can … which could then be converted into sustainable biofuels . For its importance to the DOE mission, switchgrass is among … of work; as sequencing technologies advanced, assembly and annotation of the genome sequence improved in parallel. The …
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