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A comparative genomics screen identifies a Sinorhizobium meliloti 1021 sodM-like gene strongly expressed within host plant nodules
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Analysis of twelve genomes of the bacterium Kerstersia gyiorum from brown-throated sloths (Bradypus variegatus), the first from a non-human host.
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint … and SIO. Oh, I should say what those are. Brad: What’s SIO, for all those listeners out there? Dan: Scripps Institution … Going to the laboratory and opening them up and looking at their chemistry was a pretty magical period of time. So that …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or … roots with genomes from other plant-associated fungi. Their analysis identified fungal gene families that help … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. …
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy … genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … part of the main codebase, so that if we get updates, then their features would go along. So he actually contributed …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have … have discovered giants among viruses. Now categorized in their own phylum,  Nucleocytoviricota , these giant viruses … on giant virus diversity, and how sequencing and bioinformatics have sped up the study of giant viruses. The …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. … by incorporating short sequences from infecting viruses and phages. In these sequences are virus fragments called …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint … Takemura, whose voice you’ll hear in a minute – we work for the US Department of Energy Joint Genome Institute, or … synthetic biology, that maybe they don’t have available in their labs, and we use our resources to help them solve …
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The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses.
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The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry
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