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ORT: A workflow linking genome-scale metabolic models with reactive transport codes.
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Metabolic Modeling of Fungi
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Reference genome sequence of the model plant Setaria
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Genome sequence of the model rice variety KitaakeX
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Genome sequence of the model mushroom Schizophyllum commune
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Making a Lichen Together
… mycobiont. However, despite a century-and-a-half of lichen research, many of the symbiosis’ details remain unclear. For … to better understand lichen. The Impact Lichens are a model for inter-kingdom communication and cooperation. Their … in the lichen lifestyle. The team’s results appear in  BMC Genomics . To explore the genomes, Armaleo and colleagues …
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A second special issue of Standards In Genomic Sciences from the Genomic Standards Consortium
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. … greater bioeconomy. By bringing together publicly available genomic data on algae into one place, PhycoCosm allows users … complex and difficult to sequence and understand. A team of researchers led by Algal Genomics Program lead Igor …
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Genome sequencing and analysis of the model grass Brachypodium distachyon
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Community standards and future opportunities for synthetic communities in plant–microbiota research
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Uncovering Novel Genomes from Earth’s Microbiomes
… technologies and computational methods in the past decade, researchers have uncovered genomes for just a small fraction … and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … not already been associated with a host – with 23,000 MAGs. Modeling A New Path for Metagenomics Researchers Building …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level … of Sample QC Sample Quality and Contamination JGI’s Genomic DNA Sample QC Protocol JGI’s Total RNA Sample QC …
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