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Standardized naming of microbiome samples in Genomes OnLine Database.
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … on the effective management and strategic objectives of the microbial and metagenome programs. The committee serves as the program's key …
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Relationships between fluid mixing, biodiversity, and chemosynthetic primary productivity in Yellowstone hot springs
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental … tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for …
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From Competition to Cooperation
… lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader … lineages. To learn why, researchers analyzed 135 fungal genomes representing major fungal families, including those … were previously no genomes of symbiotic species available: 73 saprotrophs and 62 mycorrhizal species. The 62 …
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Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples
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RNA-Seq-based high-resolution linkage map reveals the genetic architecture of fruiting body development in shiitake mushroom, Lentinula edodes
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Hot springs viruses at Yellowstone National Park have ancient origins and are adapted to thermophilic hosts
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Diversity and function of methyl-coenzyme M reductase-encoding archaea in Yellowstone hot springs revealed by metagenomics and mesocosm experiments
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … for the project by more than 100 participants. Roughly 700 have been sequenced and annotated, representing 384 … Tree of Life … Fungal Dataset … Plant Datasets … Genome Insider …
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Tracking the Origins of Methane-Producing Microbes
… recent studies now suggest the gene cluster predates this microbial group. Recently published in the Proceedings of … Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … detected in samples collected by Stephen Quake’s team at Yellowstone National Park’s Obsidian Pool hot spring. The …
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CalTeach
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