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… analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and …

… and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk community sequencing …

… (2022) Giant virus biology and diversity in the era of genome-resolved metagenomics. Nature Reviews Microbiology volume 20, 721–736 JC Villada, F Schulz (2022) The endosymbiotic box of …

… listed on the “info” page for that organism on the Genome Portal . … You can view the status of all public projects on the JGI Genome Portal . The PI and all authorized users can also … for functional annotation/curation of your genomes Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) …

A deep dive into microbial genomics reveals one bacterial species is made of … periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, … by grants from the Simons Foundation (#329108 and #721223 to EFD) and Gordon and Betty Moore Foundation grant …

This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, we’ve covered the specialized software and …

Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program … the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the … dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification of …

… has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community … Leahy and the JGI’s Rekha Seshadri in this JGIota, a Genome Insider podcast minisode. To date it is the single largest … aim is identifying chemical compounds that could inhibit microbial methane production. Another effort is in using …

… of those shared by both humans and flowering plants). Its genome also contains hundreds of genes uniquely associated … (Hear more from on Chlamy from Sabeeha Merchant in this episode of JGIotas, a Genome Insider podcast minisode.) Since the JGI’s early sequencing …

… first sampled the area in summer 2016.  She described the microbial diversity patterns of Puerto Nuevo’s coastal … and Higher Education at Ensenada (CICESE) in her first microbial ecology paper in the journal PLoS One . “Puerto … noted. “I spent a good portion of 2016 and all of 2017 looking for  C. californicus across the California-Baja …