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The “Most Wanted” Taxa from the Human Microbiome for Whole Genome Sequencing
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Metagenome-Assembled Genomes from a Microbiome Converting Xylose to Medium-Chain Carboxylic Acids
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New insights from uncultivated genomes of the global human gut microbiome
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A unified catalog of 204,938 reference genomes from the human gut microbiome
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Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … BGC Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ … applied to relatively tractable samples like lakes and rivers could help fill in the gaps,” she added. DSMZ not …
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Micro-Scale Applications Group
… technology in order to enhance the quality of single-cell genomes and directly link functional information with … DNA amplification, and sequence analysis to recover the genomes of uncultivated microbes. We also apply labeling … To provide additional functional insights into microbial genomes, the JGI now uses laser microdissection to …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … data sets of RNA sequences (metatranscriptomes) generated from diverse environmental samples around the world, … datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into many more …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … Horonobe Underground Research Laboratory, Hokkaido, Japan. From samples of both environments, they used fluorescence  … Area funded by the US Department of Energy (DE-AC02-05CH11231 to J.F.B.). The work ( proposal doi: …
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JGI@25: Strengthening Soybean
… and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … soybean genome sequence and ASR in this JGIota, a Genome Insider podcast minisode.)  In 2016, the JGI accepted a … a great impact for growers.”   … Glycine max on Phytozome … 3 P. pachyrhizi genomes on MycoCosm … Plant Datasets … …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership … the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA Synthesis Science Programs and draw from the infrastructure of Genomic Technologies and Data …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … person at the Walnut Creek Marriott the week of September 30 – October 4, 2024.  … The U.S. Department of Energy Joint …
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