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Transcriptomic response of the mycoparasitic fungus Trichoderma atroviride to the presence of a fungal prey
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Potential for functional divergence in ectomycorrhizal fungal communities across a precipitation gradient
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Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus
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Comparative transcriptomics uncovers poplar and fungal genetic determinants of ectomycorrhizal compatibility
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Peatland Fungal Community Responses to Nutrient Enrichment: A Story Beyond Nitrogen
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Rex Malmstrom
… and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. Later during his postdoctoral … a high throughput approach for isolating individual bacterial cells and amplifying their genetic material, thus … activity for identifying and sorting slow-growing archaeal− bacterial consortia. PNAS 113 (28), E4069-E4078 Bendall, …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and … example, the JGI first used CRAGE to engineer domesticated bacterial strains with novel biosynthetic gene clusters … , engineering different gene deletions in four gammaproteobacterial species, and then removing the editing machinery …
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How Filamentous Fungi Sense Food
… This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently published in the  … for multiple models and their close relatives across the fungal tree of life, enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also …
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Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics
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Expression quantitative trait loci mapping identified PtrXB38 as a key hub gene in adventitious root development in Populus
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Introducing New Members of the JGI User Executive Committee
… cellular phenotypes and genotypes. Pawlowska, who studies fungal-bacterial symbiotic systems, noted that she would like to … JGI efforts aimed at “understanding complex communities and symbioses relevant to the DOI mission.” Additionally, she …
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Secondary Metabolites Program
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