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Recruiting Human Microbiome Shotgun Data to Site-Specific Reference Genomes
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IMG/M: integrated genome and metagenome comparative data analysis system
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A k-mer-based approach for phylogenetic classification of taxa in environmental genomic data.
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David Goodstein
With a background in experimental and computational surface physics, Dr. Goodstein held positions at … responsible for genome annotation, comparative analysis and data distribution for the JGI's direct collaborators and the … group also develops and maintains the Phytozome Plant Genomics web portal. … BS in Physics, New York University, …
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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
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Network Modeling of Complex Data Sets
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Genomes OnLine database (GOLD) v.7: updates and new features
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Natural Prodcast Episode 17: Cassandra Quave
… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … early stage drug discovery in general, and a possible data-driven future for plant natural products. Happy … And just because you do a field study in a location doesn’t mean that you’re going to have this massive economic …
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acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… world have collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( … gene loss shape the BGC repertoire in most genomes. The BGC data will also soon be contained within the JGI’s Secondary …
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Synthetic Biology Informatics Group
… of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate methods SynTrack and associated tools, … Biology pipeline as well as provide process automation support Research Team    … For further details, please …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have … is critical to energy independence in the U.S. Not only does it pair with maize, the dominant source of bioethanol, … and that’s going really well. And having the sequence data available for us to enable that research will have a …
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