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The BioMart community portal: an innovative alternative to large, centralized data repositories

Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data

Combining Hadoop with MPI to Solve Metagenomics Problems that are both Data- and Compute-intensive

Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling

acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data

Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements

Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics

Fast and accurate identification of plasmids and viruses in sequencing data using geNomad

GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser

PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens

NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks

I-Min (Amy) Chen

… research has been focused on semantic and object-oriented data modeling, and biological data management. She was one of the co-authors and key … of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. …

Lawrence Berkeley National Laboratory is a U.S. DOE Office of Science
national laboratory managed by the University of California.