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Natural Prodcast Episode 23: Aaron Puri
… the genes for and explore the chemistry of quorum sensing systems, specifically the acyl homoserine lactones.  If you … restricted niche. And they do need broad host-range genetic tools so it’s more complicated than working with something … thing I’ve learned is that when JGI gives you a ton of data you better have someone really smart to be able to …
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Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships.
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Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation
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Global Archaeal Diversity Revealed Through Massive Data Integration: Uncovering Just Tip of Iceberg
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Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
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Natural Prodcast Episode 6: Marc Chevrette
… to unpack experimentally. But there’s a couple of different systems where people have made strides in that area. Where I … and I’m really excited about it. Because now we have the tools through genomics, and metabolomics, to ask these … for a company. Personally, that was my first taste of big data if you want, maybe it’s medium data now. But at the …
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DOE Metrics
… capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational approaches for the annotation of genomic data. [Download PDF] Q4 – Report on a new computational … computationally enabled approach to analyze complex genomic datasets. [Download PDF]   FY 2014 Overall Sequencing …
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Natural Prodcast Episode 17: Cassandra Quave
… early stage drug discovery in general, and a possible data-driven future for plant natural products. Happy … get a DNA sequence first. And there are plenty of software tools to find natural product gene clusters, and even be … identifying their roles within these complex communication systems across kingdoms of life. ALISON TAKEMURA: OK. This …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … and participation — is especially important in microbial ecosystems. These communities harbor tens of thousands of … genome-resolved metagenomes and will be implementing new tools in KBase to tackle the bioinformatic challenges …
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Making a Lichen Together
… carbon and nitrogen fixers in alpine and high latitude ecosystems, deciphering their internal molecular mechanisms can … to annotation of the genomes, available online at  PhycoCosm (for the alga genome) and  MycoCosm (for the … variation in its progeny. The study’s transcriptomic data also identified many genes potentially important for …
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MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment
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Socotra Island the forgotten fragment of Gondwana: Unmasking chameleon lizard history with complete mitochondrial genomic data
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