Results

SoyCSN: Soybean context‐specific network analysis and prediction based on tissue‐specific transcriptome data
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The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
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Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
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Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger
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Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and … Berkeley National Laboratory (Berkeley Lab), and the DOE Systems Biology Knowledgebase (KBase). They also built an … from the literature. They then used the JGI’s GOLD and IMG data portals to get information about the genomes and …
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Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9.
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of … proteins. PhycoCosm’s built-in connection to the DOE Systems Biology Knowledgebase (KBase) also allows … in algae. PhycoCosm joins other online data portals and tools created by JGI researchers, including the Integrated …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … and participation — is especially important in microbial ecosystems. These communities harbor tens of thousands of … genome-resolved metagenomes and will be implementing new tools in KBase to tackle the bioinformatic challenges …
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Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships.
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Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation
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