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Connecting metabolome and phenotype: recent advances in functional metabolomics tools for the identification of bioactive natural products
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MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets
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Comparison between Ribosomal Assembly and Machine Learning Tools for Microbial Identification of Organisms with Different Characteristics
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Three Join the JGI User Executive Committee
… The JGI User Executive Committee (UEC) recently welcomed three new … Society of America and is also a National Microbiome Data Collaborative (NMDC) Champion. As an early career … early career researchers and new users, advise on data release and sharing policies, and help develop programs …
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Natural Prodcast Episode 17: Cassandra Quave
… early stage drug discovery in general, and a possible data-driven future for plant natural products. Happy … get a DNA sequence first. And there are plenty of software tools to find natural product gene clusters, and even be … is strange because they’re exposed to the sun. They’re rubbing this all over their body. What’s going on? And so we …
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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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Introducing New Members of the JGI User Executive Committee
… The JGI welcomes three new members to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of … in giving a voice to JGI users who feel that certain data sharing policies fail to represent the needs of large … unaware that [public but use-restricted] exist on [the JGI data portal] IMG or how to deal with situations in which …
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Natural Prodcast Episode 22: Alison Narayan
… so starting from some of the enzymes that we had the most data on and knew the most about, working with my … off– JACKIE WINTER: No. ALISON NARAYAN: Often, they’re abbreviated too from alpha ketoglutarate to just AKGs. In my … with. DAN UDWARY: Yeah. ALISON NARAYAN: And there are other tools that I think are really useful, that again are set up …
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Mapping the Earth’s Hidden Fungal Kingdom
… Institute (JGI)’s Fungal and Algal Science Program and JGI users have been at the forefront of tackling this enormous … Berkeley National Laboratory (Berkeley Lab). “These data can also be used for machine learning and artificial … capture the vast nature of fungal diversity. Examining databases like MycoCosm , the JGI’s online fungal genomics …
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics … of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
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Introducing New Members of the JGI User Executive Committee
… The JGI welcomes three new members to their User Executive Committee (UEC) – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six other JGI users already serving on the UEC – go here to view the full … in access, analysis and sharing of JGI-generated data. She is also interested in reaching and engaging with …
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