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IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
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Individual genome assembly from complex community short-read metagenomic datasets
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … genome-resolved metagenomes and will be implementing new tools in KBase to tackle the bioinformatic challenges …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … autonomy; they can be isolated and grown separately from each other. A possible explanation, according to the …
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Learning to Look
… answer the question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters … by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … in the  Environmental Genomics group . Training the Search Tool Inoviruses are stealth agents that can enter and exit …
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Cataloging the Microbes that Manage the Health of River Systems
Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the … States. They also provided multiple access points to the information. The team harnessed a community-science program to …
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MicroSyn: A user friendly tool for detection of microsynteny in a gene family
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Game On: High School Students Drive Everglades Metagenomics Study
… out to many researchers with the hope of getting support for a research project for his class of 18 juniors.  He got … email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy (DOE) … tests for raw data and how to use some bioinformatics tools for analysis to help them focus on what to pull out …
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User Support Analysis Group
User Support Analysis group provides computational analysis for new technology development and JGI user science … for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows …
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Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes
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Deconvolute individual genomes from metagenome sequences through short read clustering
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Metagenomes and Metagenome-Assembled Genomes from Microbial Communities Fermenting Ultrafiltered Milk Permeate
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