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Detailed analysis of the D-galactose catabolic pathways in Aspergillus niger reveals complexity at both metabolic and regulatory level
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Bright luminescence of Vibrio fischeri aconitase mutants reveals a connection between citrate and the Gac/Csr regulatory system
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing … is organizing nearly a dozen hackathons around the world in 2019, only the JGI hackathon is particularly focused on … “JGI is one of the largest producers of environmental genomics data and has a strong reputation in the community,” …
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Tracking the ancestry of known and ‘ghost’ homeologous subgenomes in model grass Brachypodium polyploids
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Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure
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Root morphology and exudate availability are shaped by particle size and chemistry in Brachypodium distachyon
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BdRCN4, a Brachypodium distachyon TFL1 homologue, is involved in regulation of apical meristem fate.
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Repeated migration, interbreeding and bottlenecking shaped the phylogeography of the selfing grass Brachypodium stacei
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A Xyloglucan Backbone 6-O-Acetyltransferase from Brachypodium distachyon Modulates Xyloglucan Xylosylation
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Streamlining Regulon Identification in Bacteria
… a group of genes that can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy … yielded through RIViT-seq expand the known transcriptional regulatory network in bacteria, enabling the discovery of regulatory cascades as well as crosstalk between sigma …
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Enlarging Windows into Understanding Gene Functions
… proposal through the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as … years ago,” he said. “We thought about reconstructing gene regulatory networks, understanding where transcription … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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David Goodstein
… group also develops and maintains the Phytozome Plant Genomics web portal. … BS in Physics, New York University, … genomes.  eLife 11, e78526. Li et al., 2021.  Plant Pan-Genomics Comes of Age . Annual Review of Plant Biology 72, … genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors. Nature …
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