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Activity-based, genome-resolved metagenomics uncovers key populations and pathways involved in subsurface conversions of coal to methane
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… was recognized for “advances in sequence-based studies of microbial assemblies, revealing the roles of microbial communities in carbon cycling, in interactions with plants, and as drivers of methane production, nutrient cycling, greenhouse gas …
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Plant Program
… development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working … interactions, focusing on how environmental stress and microbial communities affect plant growth and productivity. … meraculous. It is now available for both eukaryotic and microbial metagenome assemblies. It is also available as an …
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Decoding Yellowstone’s Microbial Mats
… Park to study how cyanobacteria are living, communally, in microbial mats. Along the way, they’ve encountered … new technologies, and made a few discoveries about the microbial mat denizens.  …
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Draft Genome Sequence of Methyloferula stellata AR4, an Obligate Methanotroph Possessing Only a Soluble Methane Monooxygenase
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of … Time-series (HOT), they collected samples of the ocean’s microbial communities periodically at different depths. In … software suite, BBTools , and relying on the JGI Integrated Microbial Genomes & Microbiomes (IMG/M) system . By …
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Tanja Woyke Elected to American Academy of Microbiology
… National Laboratory (Berkeley Lab), Woyke has led JGI’s Microbial Genomics Program since 2009 and heads the Single … enormous impact her contributions have had on the field of microbial genomics. Her work in the areas of single-cell … Podar of Oak Ridge National Laboratory, who spoke at the 2019 New Lineages of Life (NeLLi) Meeting organized by the …
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Katherine Louie
… the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics … Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, Bowen BP, … Rocha UN, Shi S, et al. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in …
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Trent Northen
… Sciences. 2021 May 4;118(18). https://doi.org/10.1073/pnas.2019855118 McGivern BB et al. Decrypting bacterial … fabricated ecosystems. Nature Methods (16), 567–571 (2019) doi: 10.1038/s41592-019-0465-0. Couradeau E et al. … fraction of soil microbiomes using BONCAT-FACS. Nat Commun. 2019 10(1):2770. doi: 10.1038/s41467-019-10542-0. Wang G et …
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Microbial Genomics & Metagenomics (MGM) Workshop
… Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: … is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows …
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Natural Prodcast Episode 1: The Primer, Part 1
… right. So I did a PhD in microbiology at MIT, and I studied microbial ecology. I studied Vibrio species in the ocean, so … We’re looking at a schematic of different pathways in a microbial cell, it looks like. It could be a eukaryotic … I’m looking at it with, you know, it’s within a species or microbial population, you have some set of shared traits …
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JGI announces 2025 Functional Genomics awardees
… genomic information into biological function. Through our  CSP Functional Genomics call , we look for projects that … crops through transcriptional network mapping, developing microbial systems to convert renewable feedstocks into …
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